Identification of a novel missense mutation in the fibroblast growth factor 5 gene associated with longhair in the Maine Coon Cat.

Hair length can be a highly variable trait within the Felis catus species, varying between and within different cat breeds. Previous research has demonstrated this variability is due to recessive mutations within the fibroblast growth factor 5 (FGF5) gene. Following a genetic screen, four longhaired Maine Coons were identified that had only one copy of a known FGF5 mutation. We performed DNA sequencing on samples from two of these Maine Coons and identified a missense mutation in FGF5 c.577G > A p.Ala193Thr. Genetic screening via restriction digest was then performed on samples from the other two Maine Coons and an additional 273 cats of various breeds. This screening found that only the two additional Maine Coons were heterozygous for the novel variant. Furthermore, the novel variant was not identified after in silico analysis of 68 whole genome cat sequences from various breeds, demonstrating that this novel mutation is most likely a breed-specific variant for the Maine Coon, contributing to the longhair phenotype in about 3% of these cats.

The PMEL gene and merle (dapple) in the dachshund: cryptic, hidden, and mosaic variants demonstrate the need for genetic testing prior to breeding.

One of the most unique coat color patterns in the domestic dog is merle (also known as dapple in the dachshund breed), characterized by patches of normal pigmentation surrounded by diluted eumelanin pigment. In dogs, this striking variegated pattern is caused by an insertion of a SINE element into the PMEL gene. Differences in the length of the SINE insertion [due to a variable-length poly(A)-tail] has been associated with variation in the merle coat color and patterning. We previously performed a systematic evaluation of merle in 175 Australian shepherds and related breeds and correlated the length of the merle insertion variants with four broad phenotypic clusters designated as "cryptic", "atypical", "classic", and "harlequin" merle. In this study, we evaluated the SINE insertions in 140 dachshunds and identified the same major merle phenotypic clusters with only slight variation between breeds. Specifically, we identified numerous cases of true "hidden" merle in dachshunds with light/red (pheomelanin) coats with little to no black/brown pigment (eumelanin) and thus minimal or no observable merle phenotype. In addition, we identified somatic and gonadal mosaicism, with one dog having a large insertion in the harlequin size range of M281 that had no merle phenotype and unintentionally produced a double merle puppy with anophthalmia. The frequent identification of cryptic, hidden, and mosaic merle variants, which can be undetectable by phenotypic inspection, should be of particular concern to breeders and illustrates the critical need for genetic testing for merle prior to breeding to avoid producing dogs with serious health problems.

Genetic analysis of an insular population of Sapajus nigritus (Primates: Cebidae) in Rio de Janeiro state, Brazil.

The black-horned capuchin (Sapajus nigritus) is a neotropical primate with wide distribution from southeastern Brazil to northeastern Argentina. Although this species has been described with coat pattern variation, even with intrapopulational differences, and characterized as having the greatest genetic diversity among Sapajus species, there are still few studies on natural populations that contribute to the knowledge of this intraspecific variability. We examined individuals from an as yet unstudied population of Ilha da Marambaia, Rio de Janeiro (RJ) state, Brazil, compared with published data for S. nigritus. We sought to confirm the species through phenotypic and genetic characterization using C-banding and fluorescence in situ hybridization with #11qHe+/21WCP probes for chromosomal constitutive heterochromatin (He+) patterns, and cytochrome c oxidase I and II gene sequences for phylogenetic analysis. The coat presented two color patterns, varying from brown to blackish on the body, yellow to brown on the chest, and white to yellow on the face, besides the presence and shape of the tufts on the head, corresponding to S. nigritus. He+ was identified in pairs 4, 12, 13 and 17, and less consistently in pairs 6, 19 and 21, already described for this species. While most Sapajus species have a large He+ block, here pair 11 was identified without extracentromeric He+, the same as reported for S. nigritus from Argentina. Molecular analysis showed divergence of this population from other S. nigritus sequences, reinforcing a trend already demonstrated when samples from RJ are compared with the rest of the distribution, which may represent an evolutionary deviation.

Genetics and Evolution of Mammalian Coat Pigmentation.

The diversity of mammalian coat colors, and their potential adaptive significance, have long fascinated scientists as well as the general public. The recent decades have seen substantial improvement in our understanding of their genetic bases and evolutionary relevance, revealing novel insights into the complex interplay of forces that influence these phenotypes. At the same time, many aspects remain poorly known, hampering a comprehensive understanding of these phenomena. Here we review the current state of this field and indicate topics that should be the focus of additional research. We devote particular attention to two aspects of mammalian pigmentation, melanism and pattern formation, highlighting recent advances and outstanding challenges, and proposing novel syntheses of available information. For both specific areas, and for pigmentation in general, we attempt to lay out recommendations for establishing novel model systems and integrated research programs that target the genetics and evolution of these phenotypes throughout the Mammalia.

Genome analysis of American minks reveals link of mutations in Ras-related protein-38 gene to Moyle brown coat phenotype.

Over 35 fur colours have been described in American mink (Neovison vison), only six of which have been previously linked to specific genes. Moyle fur colour belongs to a wide group of brownish colours that are highly similar to each other, which complicates selection and breeding procedures. We performed whole genome sequencing for two American minks with Moyle (m/m) and Violet (a/a m/m /p/p) phenotypes. We identified two frame-shift mutations in the gene encoding Ras-related protein-38 (RAB38), which regulates the trafficking of tyrosinase-containing vesicles to maturing melanosomes. The results highlight the role of RAB38 in the biogenesis of melanosomes and melanin and the genetic mechanism contributing to hair colour variety and intensity. These data are also useful for tracking economically valuable fur traits in mink breeding programmes.

Effects of hair coat characteristics on radiant surface temperature in horses.

Horse owners may lack knowledge about natural thermoregulation mechanisms in horses. Horses are managed intensively; usually stabled at night and turned out during the day. Some are clipped and many wear a blanket, practices which reduce the horse's ability to regulate heat dissipation. The aim of this study was to investigate the relationship between hair coat characteristics, body condition and infrared surface temperatures from different body parts of horses. Under standard conditions, the body surface temperature of 21 adult horses were investigated using infrared thermography. From several readings on the same body part, a mean temperature was calculated for each body part per horse. Detailed information on horse breed, age, management and body condition was collected. Hair coat samples were also taken for analyses. A mixed statistical model was applied. Warmblood horse types (WB) had lower hair coat sample weights and shorter hair length than coldblood horse types (CB). The highest radiant surface temperatures were found at the chest 22.5 ± 0.9 °C and shoulders 20.4 ± 1.1 °C and WB horses had significantly higher surface temperatures than CB horses on the rump (P < 0.05). Horses with a higher hair coat sample weight had a lower surface temperature (P < 0.001) and hind hooves with iron shoes had a significant lower surface temperature than unshod hind hooves (P = 0.03). In conclusion, individual assessment of radiant surface temperature using infrared thermography might be a promising tool to gather data on heat loss from the horses' body. Such data may be important for management advice, as the results showed individual differences in hair coat characteristics and body condition in horses of similar breeds.

Coat and skin morphology of hair sheep breeds in an equatorial semi-arid environment.

This study aims to address if are there annual changes in the hair coat traits and skin morphology of hair sheep breeds raised in an equatorial semi-arid region? Coat and skin samples were taken from thirty Morada Nova (4 ±â€¯2 years old; red coat; ±SD) and twenty Santa Inês multiparous ewes (5 ±â€¯2 years old; brown and black coat; ±SD) every 3 months over a year. Hair coat traits included thickness (mm), density (number of hairs cm-2), length (mm), and diameter (mm), plus epidermal and dermal thickness (µm), sweat glands and blood capillaries area (µm cm-2) were determined. Means of solar irradiance and ambient air temperature were higher between September and December. Annual changes (P < 0.05) in hair density, diameter, length and thickness, as well as the skin blood capillaries and sweat gland area differed between breeds. The modifications on hair coat traits resulted in minor changes on the effective thermal conductivity of the hair coat surface both for Morada Nova and Santa Ines sheep. Nevertheless, it was clearly evident that the overall cutaneous thermal insulation for Morada Nova sheep was lowest in September that was coupled with lower hair density, coat thickness, and higher sweat gland and blood capillary area (P < 0.05). In conclusion, even in an equatorial region, phenotypic acclimatization on morphological traits of cutaneous surface and skin traits can modify the overall thermal insulation of sheep breeds.

Caracterização de pelagens em equinos da raça Campolina / Characterization of coat colors horses from the Campolina breed

Desde tempos remotos, a pelagem é valorizada no agronegócio equestre. Em animais Campolina, objetivou-se avaliar a ocorrência de pelagens e a distribuição entre sexos nos estados do Brasil, assim como verificar a frequência desse fenótipo nos acasalamentos e associá-lo com medidas lineares e qualidade da marcha. Foram selecionados 44.437 registros definitivos e utilizaram-se testes de qui-quadrado para avaliar a distribuição de pelagens entre sexos, estados e décadas. Por análise descritiva, foi obtida frequência de acasalamento dos fenótipos e proporções resultantes nos filhos. Foram contabilizados os indivíduos acasalados e os mais usados por décadas de nascimento e de registro. Pelagens baia, alazã e castanha predominaram, com 20.422; 11.941 e 5.256 animais, respectivamente. O fenótipo baio representou 45,21% em Minas Gerais; 46,98% no Rio de Janeiro e 48,98% em São Paulo. Para machos e fêmeas constatou-se maior frequência de pelagens baia, alazã e castanha. Os acasalamentos mais frequentes foram alazã x baia, baia x baia e baia x castanha. Este é o primeiro artigo a avaliar a ocorrência das pelagens em equinos da raça Campolina, sendo baia a mais prevalente em ambos os sexos. A qualidade da marcha ao registro não está associada à pelagem. Esse fenótipo deve ser usado com cautela na seleção.(AU)

Since ancient times, coat colors are valued in the equestrian business. The objective of this study was to evaluate the occurrence of coat colors and distribution among sexes in Brazil and also verify the frequency of this phenotype in reproduction to associate it with linear measurements and functionality. 44,437 definitive records were selected, and chi-square tests were used to evaluate coat colors and distribution between sexes, states and decades. By descriptive analysis the phenotypes breeding frequency and proportions in the offspring were obtained. Breeding and most used individuals were accounted by decade of birth and registration. Dun, chestnut and bay coat colors predominated, with 20,422; 11,941 and 5,256 animals, respectively. Dun represented 45.21% in Minas Gerais; 46.98% in Rio de Janeiro and 48.98% in São Paulo. For males and females there was a higher frequency of dun, chestnut and bay. The most frequent breeding colors were chestnut x dun, dun x dun and dun x bay. This is the first article to evaluate the coat colors in the Campolina population, dun being the most prevalent coat color in both sexes. The gait quality at the register is not associated with the coat color. This phenotype should be used with caution in selection.(AU)

The dynamic adaptation of Brazilian Brahman bulls.

Heat stress is one of the most important factors that affect the performance of some Bos taurus breeds and crosses in tropical regions. The Brahman breed was developed in hot regions of the world and often has genes that confer resistance to heat stress compared to other breeds of beef cattle. The goal of this work was to evaluate the adaptive responses of Brahman bulls, based on physiological, hormonal and hair characteristics according to season. The physiological, hormonal and hair characteristics were rectal temperature (RT), respiratory rate (RR), sweating rate (SR), triiodothyronine (T3), thyroxine (T4), cortisol concentrations (CO), coat thickness (CT), hair length (HL), hair diameter (HD) and hair density (ND). These were recorded in Brahman bulls from a Cerrado biome during four seasons: spring (21 September to 20 December), summer (21 December to 17 March), autumn (18 March to 20 June) and winter (21 June to 20 September). Data was analyzed using a general linear model that included season as a fixed effect; in addition, multivariate tests and logistic regression were also used to characterize the animals within each season. The meteorological variables defined the four seasons, besides identifying climatic differences between them. Significant differences (P > 0.05) were found for most of the physiological, hormonal and hair characteristics according to season. The Brahman bulls presented particular adaptive characteristics in each season. Individually, most of the Brahman bulls presented the same adaptive reaction in each season; particular similarity occurred for the summer and autumn. This pattern is a reflection of the inter-relationships between physiological responses and hair characteristics.

Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep.

BACKGROUND: Tan sheep is an indigenous Chinese breed well known for its beautiful curly fleece. One prominent breed characteristic of this sheep breed is that the degree of curliness differs markedly between lambs and adults, but the molecular mechanisms regulating the shift are still not well understood. In this study, we identified 49 differentially expressed (DE) microRNAs (miRNAs) between Tan sheep at the two stages through miRNA-seq, and combined the data with that in our earlier Suppression Subtractive Hybridization cDNA (SSH) library study to elucidate the mechanisms underlying curly fleece formation. RESULTS: Thirty-six potential miRNA-mRNA target pairs were identified using computational methods, including 25 DE miRNAs and 10 DE genes involved in the MAPK signaling pathway, steroid biosynthesis and metabolic pathways. With the differential expressions between lambs and adults confirmed by qRT-PCR, some miRNAs were already annotated in the genome, but some were novel miRNAs. Inhibition of KRT83 expression by miR-432 was confirmed by both gene knockdown with siRNA and overexpression, which was consistent with the miRNAs and targets prediction results. CONCLUSION: Our study represents the comprehensive analysis of mRNA and miRNA in Tan sheep and offers detailed insight into the development of curly fleece as well as the potential mechanisms controlling curly hair formation in humans.

The first draft reference genome of the American mink (Neovison vison).

The American mink (Neovison vison) is a semiaquatic species of mustelid native to North America. It's an important animal for the fur industry. Many efforts have been made to locate genes influencing fur quality and color, but this search has been impeded by the lack of a reference genome. Here we present the first draft genome of mink. In our study, two mink individuals were sequenced by Illumina sequencing with 797 Gb sequence generated. Assembly yielded 7,175 scaffolds with an N50 of 6.3 Mb and length of 2.4 Gb including gaps. Repeat sequences constitute around 31% of the genome, which is lower than for dog and cat genomes. The alignments of mink, ferret and dog genomes help to illustrate the chromosomes rearrangement. Gene annotation identified 21,053 protein-coding sequences present in mink genome. The reference genome's structure is consistent with the microsatellite-based genetic map. Mapping of well-studied genes known to be involved in coat quality and coat color, and previously located fur quality QTL provide new knowledge about putative candidate genes for fur traits. The draft genome shows great potential to facilitate genomic research towards improved breeding for high fur quality animals and strengthen our understanding on evolution of Carnivora.

Evolution of facial color pattern complexity in lemurs.

Interspecific variation in facial color patterns across New and Old World primates has been linked to species recognition and group size. Because group size has opposite effects on interspecific variation in facial color patterns in these two radiations, a study of the third large primate radiation may shed light on convergences and divergences in this context. We therefore compiled published social and ecological data and analyzed facial photographs of 65 lemur species to categorize variation in hair length, hair and skin coloration as well as color brightness. Phylogenetically controlled analyses revealed that group size and the number of sympatric species did not influence the evolution of facial color complexity in lemurs. Climatic factors, however, influenced facial color complexity, pigmentation and hair length in a few facial regions. Hair length in two facial regions was also correlated with group size and may facilitate individual recognition. Since phylogenetic signals were moderate to high for most models, genetic drift may have also played a role in the evolution of facial color patterns of lemurs. In conclusion, social factors seem to have played only a subordinate role in the evolution of facial color complexity in lemurs, and, more generally, group size appears to have no systematic functional effect on facial color complexity across all primates.

A Jurassic gliding euharamiyidan mammal with an ear of five auditory bones.

Gliding is a distinctive locomotion type that has been identified in only three mammal species from the Mesozoic era. Here we describe another Jurassic glider that belongs to the euharamiyidan mammals and shows hair details on its gliding membrane that are highly similar to those of extant gliding mammals. This species possesses a five-boned auditory apparatus consisting of the stapes, incus, malleus, ectotympanic and surangular, representing, to our knowledge, the earliest known definitive mammalian middle ear. The surangular has not been previously identified in any mammalian middle ear, and the morphology of each auditory bone differs from those of known mammals and their kin. We conclude that gliding locomotion was probably common in euharamiyidans, which lends support to idea that there was a major adaptive radiation of mammals in the mid-Jurassic period. The acquisition of the auditory bones in euharamiyidans was related to the formation of the dentary-squamosal jaw joint, which allows a posterior chewing movement, and must have evolved independently from the middle ear structures of monotremes and therian mammals.

Comparative Transcriptome Analysis of Mink (Neovison vison) Skin Reveals the Key Genes Involved in the Melanogenesis of Black and White Coat Colour.

Farmed mink (Neovison vison) is one of the most important fur-bearing species worldwide, and coat colour is a crucial qualitative characteristic that contributes to the economic value of the fur. To identify additional genes that may play important roles in coat colour regulation, Illumina/Solexa high-throughput sequencing technology was used to catalogue the global gene expression profiles in mink skin with two different coat colours (black and white). RNA-seq analysis indicated that a total of 12,557 genes were differentially expressed in black versus white minks, with 3,530 genes up-regulated and 9,027 genes down-regulated in black minks. Significant differences were not observed in the expression of MC1R and TYR between the two different coat colours, and the expression of ASIP was not detected in the mink skin of either coat colour. The expression levels of KITLG, LEF1, DCT, TYRP1, PMEL, Myo5a, Rab27a and SLC7A11 were validated by qRT-PCR, and the results were consistent with RNA-seq analysis. This study provides several candidate genes that may be associated with the development of two coat colours in mink skin. These results will expand our understanding of the complex molecular mechanisms underlying skin physiology and melanogenesis in mink and will provide a foundation for future studies.

Breed, Coat Color, and Hair Length as Risk Factors for Hyperthyroidism in Cats.

BACKGROUND: Hyperthyroidism is very common in older cats, but the etiopathogenesis is poorly understood. Decreased risk of hyperthyroidism has been reported in certain colorpoint breeds, and this observation previously has been hypothesized to result from relatively greater tyrosine availability for thyroid hormone production because of limited ability to convert tyrosine to melanin pigment. However, studies investigating a potential link between coat pigmentation and risk of hyperthyroidism are limited. OBJECTIVE: To identify associations between coat phenotype and hyperthyroidism by investigation of breed, coat color, and hair length as risk factors for the disease. ANIMALS: Data were used from 4,705 cats aged ≥10 years, referred to a single veterinary teaching hospital (2006-2014) in the United Kingdom. METHODS: Retrospective, epidemiological, cross-sectional study using Bayesian multivariable logistic regression to assess risk factors for hyperthyroidism. RESULTS: Burmese (odds ratio [OR], 0.01; 0.00-0.23; P = .004), Tonkinese (OR, 0.05; 0.00-0.95; P = .046), Persian (OR, 0.21; 0.10-0.44; P < .001), Siamese (OR, 0.27; 0.12-0.61; P = .002), Abyssinian (OR, 0.04; 0.00-0.74; P = .031), and British shorthair (OR, 0.47; 0.28-0.79; P = .004) breeds had decreased risk of hyperthyroidism compared to domestic shorthairs. Longhaired, nonpurebred cats (OR, 1.30; 1.03-1.64; P = .028) were at increased risk of hyperthyroidism. Coat color/pattern was not associated with hyperthyroidism in nonpurebred cats. CONCLUSIONS AND CLINICAL IMPORTANCE: We identified decreased risk of hyperthyroidism in the Tonkinese, Abyssinian, and British shorthair breeds, identified an association between risk of hyperthyroidism and hair length, and confirmed decreased risk in Burmese, Siamese, and Persian breeds. Additional studies are warranted to further investigate these findings.

Does hair coat length affect flea infestation in naturally infested dogs?

The Siphonaptera are parasitic insects of endothermic animals and Ctenocephalides felis and Pulex irritans are important parasites of dogs. This study evaluated the effect of hair coat length and time of year on the population size of C. felis and P. irritans in naturally infested dogs. Fleas were collected from 14 dogs on a monthly basis for a year (February 2015 to January 2016) at a rural property in Bagé, Rio Grande do Sul, Brazil. The dogs were divided into two groups based on hair coat length: short coat (coat length < 5.0 cm, n= 7) and long coat (coat length > 5.0 cm, n= 7). In total, 2057 fleas were collected, 1541 of which were C. felis (74.91%) and 516 were P. irritans (25.08%). The number of C. felis and P. irritans individuals was significantly affected by hair coat length and time of year. The variation in flea numbers over the study months was higher in long-coated than in short-coated dogs for the two flea species and flea numbers increased with increasing mean monthly temperatures. The results provide a better understanding of behavioral aspects of flea communities in dogs and may help develop control strategies targeting these parasites.

Does hair coat length affect flea infestation in naturally infested dogs? / A altura da pelagem interfere na população de pulgas em cães naturalmente infestados?

Abstract The Siphonaptera are parasitic insects of endothermic animals and Ctenocephalides felis and Pulex irritans are important parasites of dogs. This study evaluated the effect of hair coat length and time of year on the population size of C. felis and P. irritans in naturally infested dogs. Fleas were collected from 14 dogs on a monthly basis for a year (February 2015 to January 2016) at a rural property in Bagé, Rio Grande do Sul, Brazil. The dogs were divided into two groups based on hair coat length: short coat (coat length < 5.0 cm, n= 7) and long coat (coat length > 5.0 cm, n= 7). In total, 2057 fleas were collected, 1541 of which were C. felis (74.91%) and 516 were P. irritans (25.08%). The number of C. felis and P. irritans individuals was significantly affected by hair coat length and time of year. The variation in flea numbers over the study months was higher in long-coated than in short-coated dogs for the two flea species and flea numbers increased with increasing mean monthly temperatures. The results provide a better understanding of behavioral aspects of flea communities in dogs and may help develop control strategies targeting these parasites.

Resumo Sifonápteros são insetos parasitos de animais endotérmicos e Ctenocephalides felis e Pulex irritans são importantes parasitos dos cães. O objetivo deste trabalho foi avaliar a influência da altura da pelagem de cães sobre as espécies de pulgas em diferentes meses do ano. Foram coletadas mensalmente, durante um ano, 10 a 15 pulgas em 14 cães de uma propriedade rural no município de Bagé, RS, Brasil. Os cães foram divididos em dois grupos: “pelo curto” e ”pelo longo”, com 07 cães em cada grupo, com altura da pelagem inferior e superior a 5 cm, respectivamente. Coletou-se 2.057 pulgas, 1.541 (74,91%) C. felis e 516 (25,08%) P. irritans. O número de indivíduos de C. felis e de P. irritans foi influenciado significativamente, pelo comprimento do pelo dos animais e pelos diferentes meses do ano. Houve maior variação do número de indivíduos das duas espécies, durante os meses, em cães de pelos longos e a curva de aumento populacional acompanhou o aumento das temperaturas médias mensais. Os resultados são importantes para o melhor conhecimento de aspectos comportamentais de comunidades de pulgas em cães e para o planejamento de estratégias de controle desses parasitos.